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Last Name
Institution

Yuri Gorby

TitleAssociate Professor
InstitutionRensselaer Polytechnic Institute
DepartmentCivil Engineering
Address

     Bibliographic 
     selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Jang JK, Kan J, Bretschger O, Gorby YA, Hsu L, Kim BH, Nealson KH. Electricity generation by microbial fuel cell using microorganisms as catalyst in cathode. J Microbiol Biotechnol. 2013 Dec 28; 23(12):1765-73.
      View in: PubMed
    2. Leung KM, Wanger G, El-Naggar MY, Gorby Y, Southam G, Lau WM, Yang J. Shewanella oneidensis MR-1 bacterial nanowires exhibit p-type, tunable electronic behavior. Nano Lett. 2013 Jun 12; 13(6):2407-11.
      View in: PubMed
    3. Lin W, Wang Y, Gorby Y, Nealson K, Pan Y. Integrating niche-based process and spatial process in biogeography of magnetotactic bacteria. Sci Rep. 2013; 3:1643.
      View in: PubMed
    4. Wanger G, Gorby Y, El-Naggar MY, Yuzvinsky TD, Schaudinn C, Gorur A, Sedghizadeh PP. Electrically conductive bacterial nanowires in bisphosphonate-related osteonecrosis of the jaw biofilms. Oral Surg Oral Med Oral Pathol Oral Radiol. 2013 Jan; 115(1):71-8.
      View in: PubMed
    5. Pfeffer C, Larsen S, Song J, Dong M, Besenbacher F, Meyer RL, Kjeldsen KU, Schreiber L, Gorby YA, El-Naggar MY, Leung KM, Schramm A, Risgaard-Petersen N, Nielsen LP. Filamentous bacteria transport electrons over centimetre distances. Nature. 2012 Nov 8; 491(7423):218-21.
      View in: PubMed
    6. Ishii S, Suzuki S, Norden-Krichmar TM, Nealson KH, Sekiguchi Y, Gorby YA, Bretschger O. Functionally stable and phylogenetically diverse microbial enrichments from microbial fuel cells during wastewater treatment. PLoS One. 2012; 7(2):e30495.
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    7. Kan J, Clingenpeel S, Macur RE, Inskeep WP, Lovalvo D, Varley J, Gorby Y, McDermott TR, Nealson K. Archaea in Yellowstone Lake. ISME J. 2011 Nov; 5(11):1784-95.
      View in: PubMed
    8. Clingenpeel S, Macur RE, Kan J, Inskeep WP, Lovalvo D, Varley J, Mathur E, Nealson K, Gorby Y, Jiang H, LaFracois T, McDermott TR. Yellowstone Lake: high-energy geochemistry and rich bacterial diversity. Environ Microbiol. 2011 Aug; 13(8):2172-85.
      View in: PubMed
    9. El-Naggar MY, Wanger G, Leung KM, Yuzvinsky TD, Southam G, Yang J, Lau WM, Nealson KH, Gorby YA. Electrical transport along bacterial nanowires from Shewanella oneidensis MR-1. Proc Natl Acad Sci U S A. 2010 Oct 19; 107(42):18127-31.
      View in: PubMed
    10. McLean JS, Wanger G, Gorby YA, Wainstein M, McQuaid J, Ishii SI, Bretschger O, Beyenal H, Nealson KH. Quantification of electron transfer rates to a solid phase electron acceptor through the stages of biofilm formation from single cells to multicellular communities. Environ Sci Technol. 2010 Apr 1; 44(7):2721-7.
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    11. Torres CI, Krajmalnik-Brown R, Parameswaran P, Marcus AK, Wanger G, Gorby YA, Rittmann BE. Selecting anode-respiring bacteria based on anode potential: phylogenetic, electrochemical, and microscopic characterization. Environ Sci Technol. 2009 Dec 15; 43(24):9519-24.
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    12. Gorby Y, McLean J, Korenevsky A, Rosso K, El-Naggar MY, Beveridge TJ. Redox-reactive membrane vesicles produced by Shewanella. Geobiology. 2008 Jun; 6(3):232-41.
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    13. Shi L, Deng S, Marshall MJ, Wang Z, Kennedy DW, Dohnalkova AC, Mottaz HM, Hill EA, Gorby YA, Beliaev AS, Richardson DJ, Zachara JM, Fredrickson JK. Direct involvement of type II secretion system in extracellular translocation of Shewanella oneidensis outer membrane cytochromes MtrC and OmcA. J Bacteriol. 2008 Aug; 190(15):5512-6.
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    14. El-Naggar MY, Gorby YA, Xia W, Nealson KH. The molecular density of states in bacterial nanowires. Biophys J. 2008 Jul; 95(1):L10-2.
      View in: PubMed
    15. McLean JS, Pinchuk GE, Geydebrekht OV, Bilskis CL, Zakrajsek BA, Hill EA, Saffarini DA, Romine MF, Gorby YA, Fredrickson JK, Beliaev AS. Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1. Environ Microbiol. 2008 Jul; 10(7):1861-76.
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    16. Elias DA, Tollaksen SL, Kennedy DW, Mottaz HM, Giometti CS, McLean JS, Hill EA, Pinchuk GE, Lipton MS, Fredrickson JK, Gorby YA. The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression. Arch Microbiol. 2008 Apr; 189(4):313-24.
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    17. Bretschger O, Obraztsova A, Sturm CA, Chang IS, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, Kim BH, Fredrickson JK, Nealson KH. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants. Appl Environ Microbiol. 2007 Nov; 73(21):7003-12.
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    18. Phoenix VR, Korenevsky AA, Ferris FG, Gorby YA, Beveridge TJ. Influence of lipopolysaccharide on the surface proton-binding behavior of Shewanella spp. Curr Microbiol. 2007 Aug; 55(2):152-7.
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    19. Biju V, Pan D, Gorby YA, Fredrickson J, McLean J, Saffarini D, Lu HP. Combined spectroscopic and topographic characterization of nanoscale domains and their distributions of a redox protein on bacterial cell surfaces. Langmuir. 2007 Jan 30; 23(3):1333-8.
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    20. Gorby YA, Yanina S, McLean JS, Rosso KM, Moyles D, Dohnalkova A, Beveridge TJ, Chang IS, Kim BH, Kim KS, Culley DE, Reed SB, Romine MF, Saffarini DA, Hill EA, Shi L, Elias DA, Kennedy DW, Pinchuk G, Watanabe K, Ishii S, Logan B, Nealson KH, Fredrickson JK. Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms. Proc Natl Acad Sci U S A. 2006 Jul 25; 103(30):11358-63.
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    21. Shi L, Chen B, Wang Z, Elias DA, Mayer MU, Gorby YA, Ni S, Lower BH, Kennedy DW, Wunschel DS, Mottaz HM, Marshall MJ, Hill EA, Beliaev AS, Zachara JM, Fredrickson JK, Squier TC. Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1. J Bacteriol. 2006 Jul; 188(13):4705-14.
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    22. Fang R, Elias DA, Monroe ME, Shen Y, McIntosh M, Wang P, Goddard CD, Callister SJ, Moore RJ, Gorby YA, Adkins JN, Fredrickson JK, Lipton MS, Smith RD. Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach. Mol Cell Proteomics. 2006 Apr; 5(4):714-25.
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    23. Majors PD, McLean JS, Pinchuk GE, Fredrickson JK, Gorby YA, Minard KR, Wind RA. NMR methods for in situ biofilm metabolism studies. J Microbiol Methods. 2005 Sep; 62(3):337-44.
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    24. Wunschel DS, Hill EA, McLean JS, Jarman K, Gorby YA, Valentine N, Wahl K. Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on matrix assisted laser desorption/ionization whole cell protein fingerprints. J Microbiol Methods. 2005 Sep; 62(3):259-71.
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    25. Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, Holzman T, Klappenbach JA, Konstantinidis KT, Land ML, Lipton MS, McCue LA, Monroe M, Pasa-Tolic L, Pinchuk G, Purvine S, Serres MH, Tsapin S, Zakrajsek BA, Zhu W, Zhou J, Larimer FW, Lawrence CE, Riley M, Collart FR, Yates JR, Smith RD, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proc Natl Acad Sci U S A. 2005 Feb 8; 102(6):2099-104.
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    26. Liu C, Zachara JM, Felmy A, Gorby Y. An electrodynamics-based model for ion diffusion in microbial polysaccharides. Colloids Surf B Biointerfaces. 2004 Oct 10; 38(1-2):55-65.
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    27. Templeton AS, Trainor TP, Spormann AM, Newville M, Sutton SR, Dohnalkova A, Gorby Y, Brown GE. Sorption versus biomineralization of Pb(II) within Burkholderia cepacia biofilms. Environ Sci Technol. 2003 Jan 15; 37(2):300-7.
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    28. Liu C, Gorby YA, Zachara JM, Fredrickson JK, Brown CF. Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria. Biotechnol Bioeng. 2002 Dec 20; 80(6):637-49.
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    29. Korenevsky AA, Vinogradov E, Gorby Y, Beveridge TJ. Characterization of the lipopolysaccharides and capsules of Shewanella spp. Appl Environ Microbiol. 2002 Sep; 68(9):4653-7.
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    30. Liu C, Zachara JM, Gorby YA, Szecsody JE, Brown CF. Microbial reduction of Fe(III) and sorption/precipitation of Fe(II) on Shewanella putrefaciens strain CN32. Environ Sci Technol. 2001 Apr 1; 35(7):1385-93.
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    31. Fredrickson JK, Zachara JM, Kukkadapu RK, Gorby YA, Smith SC, Brown CF. Biotransformation of Ni-substituted hydrous ferric oxide by an Fe(III)-reducing bacterium. Environ Sci Technol. 2001 Feb 15; 35(4):703-12.
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    32. Sokolov I, Smith DS, Henderson GS, Gorby YA, Ferris FG. Cell surface electrochemical heterogeneity of the Fe(III)-reducing bacteria Shewanella putrefaciens. Environ Sci Technol. 2001 Jan 15; 35(2):341-7.
      View in: PubMed
    33. Wildung RE, Gorby YA, Krupka KM, Hess NJ, Li SW, Plymale AE, McKinley JP, Fredrickson JK. Effect of electron donor and solution chemistry on products of dissimilatory reduction of technetium by Shewanella putrefaciens. Appl Environ Microbiol. 2000 Jun; 66(6):2451-60.
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    34. Kieft TL, Fredrickson JK, Onstott TC, Gorby YA, Kostandarithes HM, Bailey TJ, Kennedy DW, Li SW, Plymale AE, Spadoni CM, Gray MS. Dissimilatory reduction of Fe(III) and other electron acceptors by a Thermus isolate. Appl Environ Microbiol. 1999 Mar; 65(3):1214-21.
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    35. Truex MJ, Peyton BM, Valentine NB, Gorby YA. Kinetics of U(VI) reduction by a dissimilatory Fe(III)-reducing bacterium under non-growth conditions. Biotechnol Bioeng. 1997 Aug 5; 55(3):490-6.
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    36. Fredrickson JK, Gorby YA. Environmental processes mediated by iron-reducing bacteria. Curr Opin Biotechnol. 1996 Jun; 7(3):287-94.
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    37. Lovley DR, Giovannoni SJ, White DC, Champine JE, Phillips EJ, Gorby YA, Goodwin S. Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. Arch Microbiol. 1993; 159(4):336-44.
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    38. Gorby YA, Lovley DR. Electron Transport in the Dissimilatory Iron Reducer, GS-15. Appl Environ Microbiol. 1991 Mar; 57(3):867-70.
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    39. Gorby YA, Beveridge TJ, Blakemore RP. Characterization of the bacterial magnetosome membrane. J Bacteriol. 1988 Feb; 170(2):834-41.
      View in: PubMed
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    Mount Sinai Profiles is managed by Conduits - The Institutes for Translational Sciences at Icahn School of Medicine, supported by the National Center for Research Resources and the National Center for Advancing Translational Sciences of the National Institutes of Health through Grant Number UL1TR000067