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Kristin Bennett

TitleProfessor
InstitutionRensselaer Polytechnic Institute
DepartmentMath
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     Bibliographic 
     selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Huang TW, Zaretzki J, Bergeron C, Bennett KP, Breneman CM. DR-Predictor: Incorporating Flexible Docking with Specialized Electronic Reactivity and Machine Learning Techniques to Predict CYP-Mediated Sites of Metabolism. J Chem Inf Model. 2013 Dec 23; 53(12):3352-66.
      View in: PubMed
    2. Ozcaglar C, Shabbeer A, Kurepina N, Rastogi N, Yener B, Bennett KP. Inferred spoligoforest topology unravels spatially bimodal distribution of mutations in the DR region. IEEE Trans Nanobioscience. 2012 Sep; 11(3):191-202.
      View in: PubMed
    3. Bergeron C, Moore G, Zaretzki J, Breneman CM, Bennett KP. Fast bundle algorithm for multiple-instance learning. IEEE Trans Pattern Anal Mach Intell. 2012 Jun; 34(6):1068-79.
      View in: PubMed
    4. Zaretzki J, Rydberg P, Bergeron C, Bennett KP, Olsen L, Breneman CM. RS-Predictor models augmented with SMARTCyp reactivities: robust metabolic regioselectivity predictions for nine CYP isozymes. J Chem Inf Model. 2012 Jun 25; 52(6):1637-59.
      View in: PubMed
    5. Shabbeer A, Cowan LS, Ozcaglar C, Rastogi N, Vandenberg SL, Yener B, Bennett KP. TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex. Infect Genet Evol. 2012 Jun; 12(4):789-97.
      View in: PubMed
    6. Ozcaglar C, Shabbeer A, Vandenberg SL, Yener B, Bennett KP. Epidemiological models of Mycobacterium tuberculosis complex infections. Math Biosci. 2012 Apr; 236(2):77-96.
      View in: PubMed
    7. Bergeron C, Moore G, Krein M, Breneman CM, Bennett KP. Exploiting domain knowledge for improved quantitative high-throughput screening curve fitting. J Chem Inf Model. 2011 Nov 28; 51(11):2808-20.
      View in: PubMed
    8. Shabbeer A, Ozcaglar C, Yener B, Bennett KP. Web tools for molecular epidemiology of tuberculosis. Infect Genet Evol. 2012 Jun; 12(4):767-81.
      View in: PubMed
    9. Ozcaglar C, Shabbeer A, Vandenberg S, Yener B, Bennett KP. Sublineage structure analysis of Mycobacterium tuberculosis complex strains using multiple-biomarker tensors. BMC Genomics. 2011; 12 Suppl 2:S1.
      View in: PubMed
    10. Zaretzki J, Bergeron C, Rydberg P, Huang TW, Bennett KP, Breneman CM. RS-predictor: a new tool for predicting sites of cytochrome P450-mediated metabolism applied to CYP 3A4. J Chem Inf Model. 2011 Jul 25; 51(7):1667-89.
      View in: PubMed
    11. Turell MJ, Wilson WC, Bennett KE. Potential for North American mosquitoes (Diptera: Culicidae) to transmit rift valley fever virus. J Med Entomol. 2010 Sep; 47(5):884-9.
      View in: PubMed
    12. Aminian M, Shabbeer A, Bennett KP. A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages. BMC Bioinformatics. 2010; 11 Suppl 3:S4.
      View in: PubMed
    13. Yener B, Acar E, Aguis P, Bennett K, Vandenberg SL, Plopper GE. Multiway modeling and analysis in stem cell systems biology. BMC Syst Biol. 2008; 2:63.
      View in: PubMed
    14. Bennett KP, Bergeron C, Acar E, Klees RF, Vandenberg SL, Yener B, Plopper GE. Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells. BMC Genomics. 2007; 8:380.
      View in: PubMed
    15. Agius P, Kreiswirth B, Naidich S, Bennett K. Typing Staphylococcus aureus using the spa gene and novel distance measures. IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec; 4(4):693-704.
      View in: PubMed
    16. Ward DF, Salasznyk RM, Klees RF, Backiel J, Agius P, Bennett K, Boskey A, Plopper GE. Mechanical strain enhances extracellular matrix-induced gene focusing and promotes osteogenic differentiation of human mesenchymal stem cells through an extracellular-related kinase-dependent pathway. Stem Cells Dev. 2007 Jun; 16(3):467-80.
      View in: PubMed
    17. Klees RF, Salasznyk RM, Vandenberg S, Bennett K, Plopper GE. Laminin-5 activates extracellular matrix production and osteogenic gene focusing in human mesenchymal stem cells. Matrix Biol. 2007 Mar; 26(2):106-14.
      View in: PubMed
    18. Vitol I, Driscoll J, Kreiswirth B, Kurepina N, Bennett KP. Identifying Mycobacterium tuberculosis complex strain families using spoligotypes. Infect Genet Evol. 2006 Nov; 6(6):491-504.
      View in: PubMed
    19. Salasznyk RM, Klees RF, Westcott AM, Vandenberg S, Bennett K, Plopper GE. Focusing of gene expression as the basis of stem cell differentiation. Stem Cells Dev. 2005 Dec; 14(6):608-20.
      View in: PubMed
    20. Salasznyk RM, Westcott AM, Klees RF, Ward DF, Xiang Z, Vandenberg S, Bennett K, Plopper GE. Comparing the protein expression profiles of human mesenchymal stem cells and human osteoblasts using gene ontologies. Stem Cells Dev. 2005 Aug; 14(4):354-66.
      View in: PubMed
    21. Bennett KE, Beaty BJ, Black WC. Selection of D2S3, an Aedes aegypti (Diptera: Culicidae) strain with high oral susceptibility to Dengue 2 virus and D2MEB, a strain with a midgut barrier to Dengue 2 escape. J Med Entomol. 2005 Mar; 42(2):110-9.
      View in: PubMed
    22. Tugcu N, Song M, Breneman CM, Sukumar N, Bennett KP, Cramer SM. Prediction of the effect of mobile-phase salt type on protein retention and selectivity in anion exchange systems. Anal Chem. 2003 Jul 15; 75(14):3563-72.
      View in: PubMed
    23. Song M, Breneman CM, Bi J, Sukumar N, Bennett KP, Cramer S, Tugcu N. Prediction of protein retention times in anion-exchange chromatography systems using support vector regression. J Chem Inf Comput Sci. 2002 Nov-Dec; 42(6):1347-57.
      View in: PubMed
    24. MacDonald AJ, Turaga PS, Harmon-Brown C, Tierney TJ, Bennett KE, McCarthy MC, Simonek SC, Enyong PA, Moukatte DW, Lustigman S. Differential cytokine and antibody responses to adult and larval stages of Onchocerca volvulus consistent with the development of concomitant immunity. Infect Immun. 2002 Jun; 70(6):2796-804.
      View in: PubMed
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    Mount Sinai Profiles is managed by Conduits - The Institutes for Translational Sciences at Icahn School of Medicine, supported by the National Center for Research Resources and the National Center for Advancing Translational Sciences of the National Institutes of Health through Grant Number UL1TR000067