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Angel Garcia

TitleProfessor
InstitutionRensselaer Polytechnic Institute
DepartmentPhysics
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     Bibliographic 
     selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Garcia AE. Please, get in my way so that I can be more efficient! Biophys J. 2013 May 7; 104(9):1842-3.
      View in: PubMed
    2. Tripathi S, Makhatadze GI, Garcia AE. Backtracking due to residual structure in the unfolded state changes the folding of the third fibronectin type III domain from tenascin-C. J Phys Chem B. 2013 Jan 24; 117(3):800-10.
      View in: PubMed
    3. Canchi DR, Jayasimha P, Rau DC, Makhatadze GI, Garcia AE. Molecular mechanism for the preferential exclusion of TMAO from protein surfaces. J Phys Chem B. 2012 Oct 11; 116(40):12095-104.
      View in: PubMed
    4. Tian J, Garcia AE. Simulation studies of protein folding/unfolding equilibrium under polar and nonpolar confinement. J Am Chem Soc. 2011 Sep 28; 133(38):15157-64.
      View in: PubMed
    5. Jimenez-Cruz CA, Makhatadze GI, Garcia AE. Protonation/deprotonation effects on the stability of the Trp-cage miniprotein. Phys Chem Chem Phys. 2011 Oct 14; 13(38):17056-63.
      View in: PubMed
    6. Vaitheeswaran S, Garcia AE. Protein stability at a carbon nanotube interface. J Chem Phys. 2011 Mar 28; 134(12):125101.
      View in: PubMed
    7. Sgourakis NG, Merced-Serrano M, Boutsidis C, Drineas P, Du Z, Wang C, Garcia AE. Atomic-level characterization of the ensemble of the Aß(1-42) monomer in water using unbiased molecular dynamics simulations and spectral algorithms. J Mol Biol. 2011 Jan 14; 405(2):570-83.
      View in: PubMed
    8. Patel MM, Sgourakis NG, Garcia AE, Makhatadze GI. Experimental test of the thermodynamic model of protein cooperativity using temperature-induced unfolding of a Ubq-UIM fusion protein. Biochemistry. 2010 Oct 5; 49(39):8455-67.
      View in: PubMed
    9. Day R, Paschek D, Garcia AE. Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein. Proteins. 2010 Jun; 78(8):1889-99.
      View in: PubMed
    10. Sgourakis NG, Garcia AE. The membrane complex between transducin and dark-state rhodopsin exhibits large-amplitude interface dynamics on the sub-microsecond timescale: insights from all-atom MD simulations. J Mol Biol. 2010 Apr 23; 398(1):161-73.
      View in: PubMed
    11. Sgourakis NG, Patel MM, Garcia AE, Makhatadze GI, McCallum SA. Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain. J Mol Biol. 2010 Mar 5; 396(4):1128-44.
      View in: PubMed
    12. Herce HD, Garcia AE, Litt J, Kane RS, Martin P, Enrique N, Rebolledo A, Milesi V. Arginine-rich peptides destabilize the plasma membrane, consistent with a pore formation translocation mechanism of cell-penetrating peptides. Biophys J. 2009 Oct 7; 97(7):1917-25.
      View in: PubMed
    13. Sgourakis NG, Day R, McCallum SA, Garcia AE. Pressure effects on the ensemble dynamics of ubiquitin inspected with molecular dynamics simulations and isotropic reorientational eigenmode dynamics. Biophys J. 2008 Oct; 95(8):3943-55.
      View in: PubMed
    14. Herce HD, Garcia AE. Cell penetrating peptides: how do they do it? J Biol Phys. 2007 Dec; 33(5-6):345-56.
      View in: PubMed
    15. Garcia AE. Molecular dynamics simulations of protein folding. Methods Mol Biol. 2008; 413:315-30.
      View in: PubMed
    16. Garcia AE, Paschek D. Simulation of the pressure and temperature folding/unfolding equilibrium of a small RNA hairpin. J Am Chem Soc. 2008 Jan 23; 130(3):815-7.
      View in: PubMed
    17. Herce HD, Garcia AE. Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes. Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52):20805-10.
      View in: PubMed
    18. Herce HD, Garcia AE, Darden T. The electrostatic surface term: (I) periodic systems. J Chem Phys. 2007 Mar 28; 126(12):124106.
      View in: PubMed
    19. Sgourakis NG, Yan Y, McCallum SA, Wang C, Garcia AE. The Alzheimer's peptides Abeta40 and 42 adopt distinct conformations in water: a combined MD / NMR study. J Mol Biol. 2007 May 18; 368(5):1448-57.
      View in: PubMed
    20. Herce HD, Garcia AE. Correction of apparent finite size effects in the area per lipid of lipid membranes simulations. J Chem Phys. 2006 Dec 14; 125(22):224711.
      View in: PubMed
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    Mount Sinai Profiles is managed by Conduits - The Institutes for Translational Sciences at Icahn School of Medicine, supported by the National Center for Research Resources and the National Center for Advancing Translational Sciences of the National Institutes of Health through Grant Number UL1TR000067