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Dmitri Papatsenko

TitleASSISTANT PROFESSOR
InstitutionMount Sinai
DepartmentDevelopmental and Regenerative Biology
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     Bibliographic 
     selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Zhang H, Nieves JL, Fraser ST, Isern J, Douvaras P, Papatsenko D, D'Souza SL, Lemischka IR, Dyer MA, Baron MH. Expression of podocalyxin separates the hematopoietic and vascular potentials of mouse embryonic stem cell-derived mesoderm. Stem Cells. 2014 Jan; 32(1):191-203.
      View in: PubMed
    2. Pereira CF, Chang B, Qiu J, Niu X, Papatsenko D, Hendry CE, Clark NR, Nomura-Kitabayashi A, Kovacic JC, Ma'ayan A, Schaniel C, Lemischka IR, Moore K. Induction of a hemogenic program in mouse fibroblasts. Cell Stem Cell. 2013 Aug 1; 13(2):205-18.
      View in: PubMed
    3. Kim Y, Iagovitina A, Ishihara K, Fitzgerald KM, Deplancke B, Papatsenko D, Shvartsman SY. Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo. Chaos. 2013 Jun; 23(2):025105.
      View in: PubMed
    4. Papatsenko D, Levine M. The Drosophila gap gene network is composed of two parallel toggle switches. PLoS One. 2011; 6(7):e21145.
      View in: PubMed
    5. Papatsenko D, Levine M, Goltsev Y. Clusters of temporal discordances reveal distinct embryonic patterning mechanisms in Drosophila and anopheles. PLoS Biol. 2011; 9(1):e1000584.
      View in: PubMed
    6. Papatsenko I, Levine M, Papatsenko D. Temporal waves of coherent gene expression during Drosophila embryogenesis. Bioinformatics. 2010 Nov 1; 26(21):2731-6.
      View in: PubMed
    7. Papatsenko D. Stripe formation in the early fly embryo: principles, models, and networks. Bioessays. 2009 Nov; 31(11):1172-80.
      View in: PubMed
    8. Goltsev Y, Papatsenko D. Time warping of evolutionary distant temporal gene expression data based on noise suppression. BMC Bioinformatics. 2009; 10:353.
      View in: PubMed
    9. Papatsenko D, Goltsev Y, Levine M. Organization of developmental enhancers in the Drosophila embryo. Nucleic Acids Res. 2009 Sep; 37(17):5665-77.
      View in: PubMed
    10. Hong JW, Hendrix DA, Papatsenko D, Levine MS. How the Dorsal gradient works: insights from postgenome technologies. Proc Natl Acad Sci U S A. 2008 Dec 23; 105(51):20072-6.
      View in: PubMed
    11. Papatsenko D, Levine MS. Dual regulation by the Hunchback gradient in the Drosophila embryo. Proc Natl Acad Sci U S A. 2008 Feb 26; 105(8):2901-6.
      View in: PubMed
    12. Papatsenko D, Levine M. A rationale for the enhanceosome and other evolutionarily constrained enhancers. Curr Biol. 2007 Nov 20; 17(22):R955-7.
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    13. Zinzen RP, Papatsenko D. Enhancer responses to similarly distributed antagonistic gradients in development. PLoS Comput Biol. 2007 May; 3(5):e84.
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    14. Papatsenko D. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors. Bioinformatics. 2007 Apr 15; 23(8):1032-4.
      View in: PubMed
    15. Zinzen RP, Cande J, Ronshaugen M, Papatsenko D, Levine M. Evolution of the ventral midline in insect embryos. Dev Cell. 2006 Dec; 11(6):895-902.
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    16. Zinzen RP, Senger K, Levine M, Papatsenko D. Computational models for neurogenic gene expression in the Drosophila embryo. Curr Biol. 2006 Jul 11; 16(13):1358-65.
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    17. Papatsenko D, Kislyuk A, Levine M, Dubchak I. Conservation patterns in different functional sequence categories of divergent Drosophila species. Genomics. 2006 Oct; 88(4):431-42.
      View in: PubMed
    18. Boeva V, Regnier M, Papatsenko D, Makeev V. Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression. Bioinformatics. 2006 Mar 15; 22(6):676-84.
      View in: PubMed
    19. Papatsenko D, Levine M. Computational identification of regulatory DNAs underlying animal development. Nat Methods. 2005 Jul; 2(7):529-34.
      View in: PubMed
    20. Papatsenko D, Levine M. Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo. Proc Natl Acad Sci U S A. 2005 Apr 5; 102(14):4966-71.
      View in: PubMed
    21. Ochoa-Espinosa A, Yucel G, Kaplan L, Pare A, Pura N, Oberstein A, Papatsenko D, Small S. The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila. Proc Natl Acad Sci U S A. 2005 Apr 5; 102(14):4960-5.
      View in: PubMed
    22. Nazina AG, Papatsenko DA. Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency. BMC Bioinformatics. 2003 Dec 22; 4:65.
      View in: PubMed
    23. Clyde DE, Corado MS, Wu X, Paré A, Papatsenko D, Small S. A self-organizing system of repressor gradients establishes segmental complexity in Drosophila. Nature. 2003 Dec 18; 426(6968):849-53.
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    24. Makeev VJ, Lifanov AP, Nazina AG, Papatsenko DA. Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information. Nucleic Acids Res. 2003 Oct 15; 31(20):6016-26.
      View in: PubMed
    25. Tahayato A, Sonneville R, Pichaud F, Wernet MF, Papatsenko D, Beaufils P, Cook T, Desplan C. Otd/Crx, a dual regulator for the specification of ommatidia subtypes in the Drosophila retina. Dev Cell. 2003 Sep; 5(3):391-402.
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    26. Cook T, Pichaud F, Sonneville R, Papatsenko D, Desplan C. Distinction between color photoreceptor cell fates is controlled by Prospero in Drosophila. Dev Cell. 2003 Jun; 4(6):853-64.
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    27. Lifanov AP, Makeev VJ, Nazina AG, Papatsenko DA. Homotypic regulatory clusters in Drosophila. Genome Res. 2003 Apr; 13(4):579-88.
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    28. Papatsenko DA, Makeev VJ, Lifanov AP, Régnier M, Nazina AG, Desplan C. Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. Genome Res. 2002 Mar; 12(3):470-81.
      View in: PubMed
    29. Papatsenko D, Nazina A, Desplan C. A conserved regulatory element present in all Drosophila rhodopsin genes mediates Pax6 functions and participates in the fine-tuning of cell-specific expression. Mech Dev. 2001 Mar; 101(1-2):143-53.
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    30. Papatsenko D, Sheng G, Desplan C. A new rhodopsin in R8 photoreceptors of Drosophila: evidence for coordinate expression with Rh3 in R7 cells. Development. 1997 May; 124(9):1665-73.
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    31. Belikov S, Papatsenko D, Preobrazhenskaya O, Sushkov V, Karpov V. Sequential arrangement, not transcriptional activity, determines conformational stability of nucleosomes. J Biomol Struct Dyn. 1997 Apr; 14(5):651-5.
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    32. Belikov SV, Papatsenko DA, Tsibulin KV, Karpov VL. [A simple and effective method of synthesis of chain-specific DNA probes]. Dokl Akad Nauk. 1996 Nov; 351(3):404-5.
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    33. Belikov SV, Papatsenko DA, Karpov VL. A method to synthesize strand-specific probes. Anal Biochem. 1996 Aug 15; 240(1):152-4.
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    34. Papatsenko DA, Priporova IV, Belikov SV, Karpov VL. Mapping of DNA-binding proteins along the yeast genome by UV-induced DNA-protein crosslinking. FEBS Lett. 1996 Feb 26; 381(1-2):103-5.
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    35. Papatsenko DA, Priporova IV, Kukarin AV, Preobrazhenskaia OV, Karpov VL, Mirzabekov AD. [Detection of nonhistone proteins, bound with regulatory elements of yeast rRNA genes, by UV-crosslinks in intact nuclei]. Mol Biol (Mosk). 1994 Nov-Dec; 28(6):1376-82.
      View in: PubMed
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    Mount Sinai Profiles is managed by Conduits - The Institutes for Translational Sciences at Icahn School of Medicine, supported by the National Center for Research Resources and the National Center for Advancing Translational Sciences of the National Institutes of Health through Grant Number UL1TR000067