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Last Name
Institution

Davide Provasi

TitleASSISTANT PROFESSOR
InstitutionMount Sinai
DepartmentStructural and Chemical Biology
Address

     Bibliographic 
     selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Scarabelli G, Provasi D, Negri A, Filizola M. Bioactive conformations of two seminal delta opioid receptor penta-peptides inferred from free-energy profiles. Biopolymers. 2014 Jan; 101(1):21-7.
      View in: PubMed
    2. Coudray N, Valvo S, Hu M, Lasala R, Kim C, Vink M, Zhou M, Provasi D, Filizola M, Tao J, Fang J, Penczek PA, Ubarretxena-Belandia I, Stokes DL. Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy. Proc Natl Acad Sci U S A. 2013 Feb 5; 110(6):2140-5.
      View in: PubMed
    3. Johnston JM, Wang H, Provasi D, Filizola M. Assessing the relative stability of dimer interfaces in g protein-coupled receptors. PLoS Comput Biol. 2012; 8(8):e1002649.
      View in: PubMed
    4. Fribourg M, Moreno JL, Holloway T, Provasi D, Baki L, Mahajan R, Park G, Adney SK, Hatcher C, Eltit JM, Ruta JD, Albizu L, Li Z, Umali A, Shim J, Fabiato A, MacKerell AD, Brezina V, Sealfon SC, Filizola M, González-Maeso J, Logothetis DE. Decoding the signaling of a GPCR heteromeric complex reveals a unifying mechanism of action of antipsychotic drugs. Cell. 2011 Nov 23; 147(5):1011-23.
      View in: PubMed
    5. Provasi D, Artacho MC, Negri A, Mobarec JC, Filizola M. Ligand-induced modulation of the free-energy landscape of G protein-coupled receptors explored by adaptive biasing techniques. PLoS Comput Biol. 2011 Oct; 7(10):e1002193.
      View in: PubMed
    6. Wang H, Barreyro L, Provasi D, Djemil I, Torres-Arancivia C, Filizola M, Ubarretxena-Belandia I. Molecular determinants and thermodynamics of the amyloid precursor protein transmembrane domain implicated in Alzheimer's disease. J Mol Biol. 2011 May 20; 408(5):879-95.
      View in: PubMed
    7. Johnston JM, Aburi M, Provasi D, Bortolato A, Urizar E, Lambert NA, Javitch JA, Filizola M. Making structural sense of dimerization interfaces of delta opioid receptor homodimers. Biochemistry. 2011 Mar 15; 50(10):1682-90.
      View in: PubMed
    8. Provasi D, Johnston JM, Filizola M. Lessons from free energy simulations of delta-opioid receptor homodimers involving the fourth transmembrane helix. Biochemistry. 2010 Aug 10; 49(31):6771-6.
      View in: PubMed
    9. Zhu J, Zhu J, Negri A, Provasi D, Filizola M, Coller BS, Springer TA. Closed headpiece of integrin aIIbß3 and its complex with an aIIbß3-specific antagonist that does not induce opening. Blood. 2010 Dec 2; 116(23):5050-9.
      View in: PubMed
    10. Provasi D, Filizola M. Putative active states of a prototypic g-protein-coupled receptor from biased molecular dynamics. Biophys J. 2010 May 19; 98(10):2347-55.
      View in: PubMed
    11. Provasi D, Murcia M, Coller BS, Filizola M. Targeted molecular dynamics reveals overall common conformational changes upon hybrid domain swing-out in beta3 integrins. Proteins. 2009 Nov 1; 77(2):477-89.
      View in: PubMed
    12. Provasi D, Bortolato A, Filizola M. Exploring molecular mechanisms of ligand recognition by opioid receptors with metadynamics. Biochemistry. 2009 Oct 27; 48(42):10020-9.
      View in: PubMed
    13. Caldarini M, Vasile F, Provasi D, Longhi R, Tiana G, Broglia RA. Identification and characterization of folding inhibitors of hen egg lysozyme: an example of a new paradigm of drug design. Proteins. 2009 Feb 1; 74(2):390-9.
      View in: PubMed
    14. Bortolato A, Mobarec JC, Provasi D, Filizola M. Progress in elucidating the structural and dynamic character of G Protein-Coupled Receptor oligomers for use in drug discovery. Curr Pharm Des. 2009; 15(35):4017-25.
      View in: PubMed
    15. Marini F, Camilloni C, Provasi D, Broglia RA, Tiana G. Metadynamic sampling of the free-energy landscapes of proteins coupled with a Monte Carlo algorithm. Gene. 2008 Oct 1; 422(1-2):37-40.
      View in: PubMed
    16. Camilloni C, Provasi D, Tiana G, Broglia RA. Exploring the protein G helix free-energy surface by solute tempering metadynamics. Proteins. 2008 Jun; 71(4):1647-54.
      View in: PubMed
    17. Camilloni C, Sutto L, Provasi D, Tiana G, Broglia RA. Early events in protein folding: Is there something more than hydrophobic burst? Protein Sci. 2008 Aug; 17(8):1424-33.
      View in: PubMed
    18. Verkhivker G, Tiana G, Camilloni C, Provasi D, Broglia RA. Atomistic simulations of the HIV-1 protease folding inhibition. Biophys J. 2008 Jul; 95(2):550-62.
      View in: PubMed
    19. Camilloni C, Provasi D, Tiana G, Broglia RA. Optical absorption of a green fluorescent protein variant: environment effects in a density functional study. J Phys Chem B. 2007 Sep 13; 111(36):10807-12.
      View in: PubMed
    20. Bonomi M, Gervasio FL, Tiana G, Provasi D, Broglia RA, Parrinello M. Insight into the folding inhibition of the HIV-1 protease by a small peptide. Biophys J. 2007 Oct 15; 93(8):2813-21.
      View in: PubMed
    21. Broglia RA, Tiana G, Sutto L, Provasi D, Perelli V. Low-throughput model design of protein folding inhibitors. Proteins. 2007 May 1; 67(2):469-78.
      View in: PubMed
    22. Broglia RA, Provasi D, Vasile F, Ottolina G, Longhi R, Tiana G. A folding inhibitor of the HIV-1 protease. Proteins. 2006 Mar 1; 62(4):928-33.
      View in: PubMed
    23. Broglia RA, Tiana G, Sutto L, Provasi D, Simona F. Design of HIV-1-PR inhibitors that do not create resistance: blocking the folding of single monomers. Protein Sci. 2005 Oct; 14(10):2668-81.
      View in: PubMed
    24. Tiana G, Provasi D, Broglia RA. Role of bulk and of interface contacts in the behavior of lattice model dimeric proteins. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 May; 67(5 Pt 1):051909.
      View in: PubMed
    25. Pandolfini C, Impicciatore P, Provasi D, Rocchi F, Campi R, Bonati M. Off-label use of drugs in Italy: a prospective, observational and multicentre study. Acta Paediatr. 2002; 91(3):339-47.
      View in: PubMed
    26. Impicciatore P, Choonara I, Clarkson A, Provasi D, Pandolfini C, Bonati M. Incidence of adverse drug reactions in paediatric in/out-patients: a systematic review and meta-analysis of prospective studies. Br J Clin Pharmacol. 2001 Jul; 52(1):77-83.
      View in: PubMed
    27. Tiana G, Broglia RA, Provasi D. Designability of lattice model heteropolymers. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jul; 64(1 Pt 1):011904.
      View in: PubMed
    28. Provasi D, De Ascentiis A, Minutello A, Colombo P, Catellani PL. Nasal delivery progesterone powder formulations comparison with oral administration. Boll Chim Farm. 1993 Nov; 132(10):402-4.
      View in: PubMed
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    Mount Sinai Profiles is managed by Conduits - The Institutes for Translational Sciences at Icahn School of Medicine, supported by the National Center for Research Resources and the National Center for Advancing Translational Sciences of the National Institutes of Health through Grant Number UL1TR000067